Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
PAAD rs62363221 chr5:72656976 C/T 2.97E-9 171 15.57 13.87 2.2 KM Plot
PAAD rs62378869 chr5:140524549 A/C 1.72E-5 177 15.95 14.33 7.85 KM Plot
PAAD rs62378893 chr5:140526702 T/C 1.72E-5 177 15.95 14.33 7.85 KM Plot
PAAD rs62386676 chr5:172100698 C/T 8.41E-5 175 15.4 15.57 3.9 KM Plot
PAAD rs62386677 chr5:172101460 T/C 7.62E-5 176 15.37 16.03 3.9 KM Plot
PAAD rs62431981 chr7:1157086 C/T 1.02E-5 172 15.48 16.37 4 KM Plot
PAAD rs62480369 chr7:155738284 C/T 1.34E-7 172 15.38 15.67 1.53 KM Plot
PAAD rs62518580 chr8:72551739 T/A 4.59E-8 175 15.77 12.2 3.17 KM Plot
PAAD rs629191 chr11:74654714 G/T 0.000114 178 4.27 15.5 15.57 KM Plot
PAAD rs633824 chr11:74606622 A/G 0.000114 178 4.27 15.5 15.57 KM Plot
PAAD rs634405 chr1:114861832 G/A 0 170 15.55 15.87 0.4 KM Plot
PAAD rs634789 chr6:44896518 G/C 0.000164 178 16.6 15.67 13.13 KM Plot
PAAD rs636845 chr6:44935341 C/T 4.33E-5 178 16.22 16.13 11.77 KM Plot
PAAD rs6425966 chr1:36611287 C/T 8.54E-5 178 16.27 12.2 19.47 KM Plot
PAAD rs6429787 chr1:16230657 T/C 1.67E-6 178 15.57 14.57 3.43 KM Plot